Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PCPG rs35992251 chr2:24288897 G/A 0.00011 178 25.4 26.57 17.43 KM Plot
PCPG rs35994878 chr16:89949033 T/C 0.00016 174 25.87 22.63 36.37 KM Plot
PCPG rs35997713 chr5:179415609 CATTT/C 0.000243 176 24.1 34.73 14.83 KM Plot
PCPG rs36020663 chr14:74320838 T/C 1.06E-5 177 25.47 28.38 10.3 KM Plot
PCPG rs36043566 chr2:242557028 G/C 4.1E-11 178 25.87 24.7 10.3 KM Plot
PCPG rs36056191 chr3:161092196 GA/G 0.000268 172 25.87 19.85 3.17 KM Plot
PCPG rs36064904 chr16:1720875 C/T 0 178 25.53 18.75 2.93 KM Plot
PCPG rs36065173 chr17:50272817 T/TA 8.03E-5 174 25.77 28.47 14.47 KM Plot
PCPG rs36066123 chr3:150893913 G/A 6.3E-11 171 24.85 33.13 10.3 KM Plot
PCPG rs36086089 chr18:44143153 C/T 1.22E-7 176 25.08 26.57 19.87 KM Plot
PCPG rs36088050 chr2:242520091 A/C 4.22E-5 177 25.87 25.67 20.2 KM Plot
PCPG rs36090694 chr3:53010742 T/C 6.05E-6 178 25.28 26.05 11.78 KM Plot
PCPG rs36092914 chr15:43100623 C/A 2.29E-14 177 25.53 24.7 3.17 KM Plot
PCPG rs36098732 chr14:74494081 C/T 5.79E-7 173 25.17 28.38 7.4 KM Plot
PCPG rs36114385 chr16:90038369 A/G 1.26E-8 171 25.77 20.2 6.62 KM Plot